An overview of indexes to evaluate terrestrial plants for phytoremediation purposes (Review)

This paper reviews the various factors, coefficients and indexes developed to evaluate terrestrial plant performance in respect to phytoremediation.A brief list of indexes includes the Accumulation factor, Bioabsorption coefficient, Bioaccumulation coefficient, Bioaccumulation factor, Bioconcentration, Bioconcentration coefficient, Bioconcentration factor, Biological absorption coefficient, Biological accumulation coefficient, Biological concentration factor, Biological transfer coefficient, Concentration factor, Enrichment coefficient, Enrichment factor, Extraction coefficient, Index of bioaccumulation, Mobility index, Shoot accumulation factor, Soil host transfer factor, Soil-plant transfer coefficient, Soil-plant transfer factor, Transfer factor and Translocation factor.These indexes represent the result of a ratio calculation between element concentrations in plant parts to that of substrata. In other cases indexes arise from the ratio calculation of element concentrations in two distinct plant parts.In the literature different terms have been attributed to the same ratio and this often represents an overlap in terminology. On the other hand the same term corresponds to several different ratios and this could create confusion and misinterpretation in data comparison.Furthermore, the evaluation of hyperaccumulation, phytostabilization or phytoextraction of plant species is not always performed in the same way. Different plant parts are considered as well as different extraction procedures for both plant and substrata element assessment. As a consequence, a direct comparison between obtained data is not always reliable and possible.In this paper the various available indexes are reviewed, highlighting both the similarity and differences between them with the aim of helping the community in choosing the appropriate term for both data evaluation and comparison. In this author’s opinion there is no need of new terms to define indexes. I would stress the need for conformity to the original definitions and criteria.     

Secondary productivity (3H-Leucine and 3H-Thymidine incorporation), abundance and biomass of the epiphytic bacteria attached to detritus of Typha domingensis pers. in a tropical coastal lagoon

Senescent, naturally dried leaves of Typha domingensis were incubated inthe littoral region of a coastal lagoon and epiphytic bacterial volume,abundance, biomass and secondary productivity were measured during 127 daysof decomposition. The peak of cell abundance was registered at t =127 days when expressed per leaf surface area (10.07×10⁷cells cm^-2; 7.26 µgC cm^-2), and at t= 26 days when expressed per biofilm dry mass (38.10 ×10⁷ cells (mgDM biofilm)^-1, 30.52 µgC(mgDM biofilm)^-1). The highest values of bacterial biovolumesand lower turnover time were usually obtained in the beginning of thecolonization. Leu:Tdr ratios were also higher in the beginning of thecolonization, when bacterial community presented unbalanced metabolism.Consequently, the highest discrepancies between the bacterial secondaryproduction estimated by leu and Tdr incorporation were observed in the first2 days of decomposition. On average, the bacterial secondary productivityestimated by leu incorporation was 2.1 times higher than the valuesestimated by Tdr incorporation when the empirical factor for Tdr wasobtained from the relationship between Tdr and biomass increment. Thisdifference increased to 4.2 when the empirical factor was obtained from therelationship between Tdr and cell numbers increment. An average of bothmethods (0.0037 to 0.1397 µgC cm^-2 h^-1)produced results that fall within the range reported in the literature forepiphytic bacteria of freshwater ecosystems.     

Short-term variability of plant populations within a regularly disturbed habitat

The changing populations of weeds during 13 years of the Broadbalk continuous wheat experiment were analysed to investigate the extent of differences in shortterm variability of cover between species. The data were from two sections of the experiment where winter wheat was grown continuously under herbicide treatment for 13 and 6 years respectively. Logistic regressions were fitted to the data. Equisetum arvense showed significant long-term increases on both sections; long-term trends were also detected in the longer data run for Agrostis stolonifera, Cirsium arvensa, Poa trivialis, Ranunculus arvensis and Vicia sativa, and for Medicago lupulina on the shorter data run. Variation around long-term trends was low in the case of Equisetum, and, in the longer data run, for Cirsium and Tussilago farfara, and high for Poa spp. and Vicia. Cover values on the two sections were positively correlated for Alopecurus myosuroides, Equisetum, Poa annua and Tripleurospermum inodorum. There was a weak correlation between C-S-R strategy and short-term variability; the more competitive species displayed less variability than the ruderal species. Furthermore, species regenerating from persistent seed banks were more variable in the short term than those regenerating from short-lived seed or bud banks. This can be explained by differences in response to year-to-year variation in environmental conditions, those species with persistent seed banks being typically more sensitive to annual fluctuations in the environment than those without.     

Root responses to legume plants integrate information on nitrogen availability and neighbour identity

Rhizobial symbiosis is known to increase the nitrogen availability in the rhizosphere of legumes. Therefore, it has been hypothesized that other plants’ roots should forage towards legume neighbours, but avoid non-legume neighbours. Yet, root distribution responding to legume plants as opposed to non-legumes has not yet been rigorously tested and might well be subject to integration of multiple environmental cues.In this study, wedevised an outdoor mesocosm experiment to examine root distributions of the two plant species Pilosella officinarum and Arenaria serpyllifolia in a two-factorial design. While one factor was ‘neighbour identity’, where plants were exposed to different legume or non-legume neighbours, the other factor was ‘nitrogen supply’. In the latter the nutrient-poor soil was supplemented with either nitrogen-free or with nitrogen-containing fertilizer.Unexpectedly, of all treatments that included a legume neighbour (eight different species or factor combinations), we found merely one case of root aggregation towards a legume neighbour (P. officinarum towards Medicago minima under nitrogen-fertilized conditions). In this very treatment, also P. officinarum root–shoot allocation was strongly increased, indicating that neighbour recognition is coupled with a contesting strategy.Considering the various response modes of the tested species towards the different legume and non-legume neighbours, we can conclude that roots integrate information on neighbour identity and resource availability in a complex manner. Especially the integration of neighbour identity in root decisions must be a vital aptitude for plants to cope with their complex biotic and abiotic environment in the field.     

Culture-independent analysis of an endophytic core microbiome in two species of wheat: Triticum aestivum L. (cv. ‘Hondia’) and the first report of microbiota in Triticum spelta L. (cv. ‘Rokosz’)

The main goal of the study was to determine the structure of endophytic bacteria inhabiting different parts (endosperm, germ, roots, coleoptiles, and leaves) of two wheat species, Triticum aestivum L. (cv. ‘Hondia’) and Triticum spelta L. (cv. ‘Rokosz’), in order to provide new knowledge about the stability and/or changeability of the core microbiome in different plant organs. The endophytic core microbiome is associated with plants throughout their whole life cycle; however, plant organs can determine the actual endophytic community. Therefore, next generation sequencing with MiSeq Illumina technology was applied to identify the endophytic microbiome of T. aestivum and T. spelta. Bioinformatic analyses were performed with the use of the DADA2(1.8) package and R software (3.5.1).It was demonstrated that wheat, which is an important crop plant, was associated with beneficial endophytic bacteria inside the endosperms, germs, roots, leaves, and coleoptiles. Importantly, for the first time, biodiversity was recognized in the coleoptiles of the investigated wheat species. Flavobacterium, Pseudomonas and Janthinobacterium were shown to be common genera for both tested wheat cultivars. Among them, Pseudomonas was found to be the only endophytic genus accompanying both wheat species from the endosperm stage to the development of the leaf. Paenibacillus was recognized as a core genus for the ‘Hondia’ cv., whereas Pedobacter and Duganella constituted the core microbiome in the ‘Rokosz’ cv. In addition, the first insight into the unique and yet unrecognized endophytic microbiome of T. spelta is presented.     

Stress responses and specific metal exclusion on mine soils based on germination and growth studies by Australian golden wattle

We reported the Australian golden wattle as a copper stabilizer in abandoned copper mine soils earlier. Here we investigate to confirm this plant’s suitability to grow on metal contaminated mine soils based on stress indication. The seeds of Acacia pycnantha collected from mining area were germinated after heat and no heat treatment on two types of irrigation. The daily irrigated and heat treated seeds gave up to 85% germination on sandy soil. The A. pycnantha was grown under greenhouse condition in six different soils collected from abandoned copper mine at Kapunda in South Australia. Among the six soil samples, soil-1 with the highest copper concentration produced 2.05 mmol g⁻¹ tissue of proline. Proline expression was prominent in more saline soils (1, 5 and 6) having electrical conductivity (EC) 1184, 1364 and 1256 μS, respectively. Chlorophyll a, b and carotenoid levels in plants showed a gradually decreasing trend in all the soils as experiment progressed. The plants grown on soil sample-1, containing 4083 ± 103 mg kg⁻¹ of copper resulted in 18 ± 2 mg kg⁻¹ accumulation in its leaf. The calcium accumulation was significant up to 11648 ± 1209 mg kg⁻¹ in leaf. Although pore water samples showed higher Cu concentration in soils, an increased mobility of arsenic and lead was observed in all the soil samples. Our experiment points out the need for proper monitoring of revegetation processes to avoid revegetation and reclamation failure.     

Changes in plant species richness and productivity in response to decreased nitrogen inputs in grassland in southern England

Biomass production and plant species diversity in grassland in southern England was monitored before and after a change from conventional to organic farming. Our 18-year study, part of the UK's Environmental Change Network long-term monitoring programme, showed that the cessation of artificial fertiliser use on grassland after conversion to organic farming resulted in a decrease in biomass production and an increase in plant species richness. Grassland productivity decreased immediately after fertiliser application ceased, and after two years the annual total biomass production had fallen by over 50%. In the subsequent decade, total annual grassland productivity did not change significantly, and yields reached 31–66% of the levels recorded pre-management change. Plant species richness that had remained stable during the first 5 years of our study under conventional farming, increased by 300% over the following 13 years under organic farm management. We suggest that the change in productivity is due to the altered composition of species within the plots. In the first few years after the change in farming practice, high yielding, nitrogen-loving plants were outcompeted by lower yielding grasses and forbs, and these species remained in the plots in the following years. This study shows that grassland can be converted from an environment lacking in plant species diversity to a relatively species-rich pasture within 10–15 years, simply by stopping or suspending nitrogen additions. We demonstrate that the trade-off for increasing species richness is a decrease in productivity. Grassland in the UK is often not only managed from a conservation perspective, but to also produce a profitable yield. By considering the species composition and encouraging specific beneficial species such as legumes, it may be possible to improve biomass productivity and reduce the trade-off.     

Plant-growth regulators from common starfish (<Emphasis Type="Italic">Asterias amurensis</Emphasis> Lütken) waste

Starfish waste has been shown to be an effective compost material not only in the promotion of plant growth but also in terms of having insecticidal activity. In the present study, plant growth regulation by chemicals from starfish was examined. The aqueous fraction from a hot water extract of the starfish Asterias amurensis Lütken showed plant-growth activity, while the aqueous fraction from a methanol extract inhibited growth of Brassica campestris. The lipophilic fraction from the methanol extract also exhibited a plant growth-promoting effect. The active components from each extract were identified. Asterubine from the hot water extract promoted plant growth. A ceramide from the lipophilic fraction showed root growth promoting effect, and three glucocerebrosides had promotive effects on the entire plant. Asterosaponins were identified as the main growth inhibitors in the aqueous fraction of the methanol extract. These active compounds from starfish waste could be analyzed as potential plant growth regulators in agricultural applications in the future.     

Induced resistance during the interaction pathogen x plant and the use of resistance inducers

Plants react to aggressions through different defence responses. Mechanical barriers consist in the increase of production and deposition of substances capable of containing pathogen invasion. Chemical barriers consist in the increase of concentration or activity of defence proteins and synthesis of phenolic compounds and phytoalexins. Elicitor substances have been widely used in plant disease control showing impressive results and a low impact to the environment and man. This review contains information about plant defence mechanisms and shows the use of inducers of resistance in the control of pathogens and prospects of advance towards sustainable agriculture.     

Resprouting in the Mediterranean‐type shrub Erica australis afffected by soil resource availability

Abstract. Soil resource availability may affect plant regeneration by resprouting in disturbed environments directly, by affecting plant growth rates, or indirectly by determining allocation to storage in the resprouting organs. Allocation to storage may be higher in stressful, low resource‐supply soils, but under such conditions plant growth rates may be lower. These factors could act in opposite directions leading to poorly known effects on resprouting. This paper analyses the role played by soil resources in the production and growth of resprouts after removal of above‐ground plant tissues in the Mediterranean shrub Erica australis. At 13 sites, differing in substrate, we cut the base of the stems of six plants of E. australis and allowed them to resprout and grow for two years. Soils were chemically analysed and plant water potential measured during the summer at all sites to characterize soil resource availability. We used stepwise regression analysis to determine the relationships between the resprouting response [mean site values of the number of resprouts (RN), maximum length (RML) and biomass (RB)] and soil nutrient content and plant water potential at each site. During the first two years of resprouting there were statistically significant differences among sites in the variables characterizing the resprouting response. RML was always different among sites and had little relationship with lignotuber area. RN was less different among sites and was always positively correlated with lignotuber area. RB was different among sites after the two years of growth. During the first months of resprouting, RN and RML were highly and positively related to the water status of the plant during summer. At later dates soil fertility variables came into play, explaining significant amounts of variance of the resprouting variables. Soil extractable cations content was the main variable accounting for RML and RB. Our results indicate that resprout growth of E. australis is positively affected by high water availability at the beginning of the resprouting response and negatively so by high soil extractable cation content at later periods. Some of these factors had previously shown to be related, with an opposite sign, to the development of a relatively larger lignotuber. Indeed, RML and RB measured in the second year of resprouting were significantly and negatively correlated with some indices of biomass allocation to the lignotuber at each site. This indicates that sites favouring allocation to the resprouting organ may not favour resprout growth.